Pristupačnost
Campolina: a deep neural framework for accurate segmentation of nanopore signals
RiNALMo: general-purpose RNA language models can generalize well on structure prediction tasks
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
Evaluating data requirements for high-quality haplotype-resolved genomes for creating robust pangenome references
Rockfish: A transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing
RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks
Comparative Analysis of Nanopore-based Unsupervised Learning Methods in Epitranscriptomics
Detecting a wide range of epitranscriptomic modifications using a nanopore-sequencing-based computational approach with 1D score-clustering
The Hitchhiker’s Guide to Sequencing Data Types and Volumes for Population-Scale Pangenome Construction
Telomere-to-telomere phased genome assembly using error-corrected Simplex nanopore reads
The Applied genomics development strategy by the Croatian academy of sciences and arts paves the way for the future development of applied genomics in Croatia
Geometric deep learning framework for de novo genome assembly
Facilitating genome structural variation analysis
Reconstruction of short genomic sequences with graph convolutional networks
Utilizing parental data in trio binning diploid de novo genome assembly
Improving Metagenomic Classification Accuracy through Metagenome Assembly-driven Database Reduction
Harnessing the Power of Language Models to Predict RNA Structure
Reconstruction of short genomic sequences with graph convolutional networks
Asian Reference Genome Project
Direct identification of A-to-I editing sites with nanopore native RNA sequencing
Removing chimeric reads improves metagenome assembly
Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits
Whole genome comparison of Vibrio harveyi strains from the Mediterranean Sea
Whole genome comparison of Vibrio harveyi strains from the Mediterranean Sea
Efficacy of next-generation sequencing in bacterial zoonoses diagnostics
Time- and memory-efficient genome assembly with Raven
Benchmarking metagenomic classification tools for long read sequencing data
Detecting Base Modifications in DNA Sequences
A step towards neural genome assembly
Deep learning approach to determining the type of long reads
Disentangling Sources of Influence in Online Social Networks
Yet another de novo genome assembler
Approaches to metagenomic classification and assembly
Hybrid metagenomic assembly enables high- resolution analysis of resistance determinants and mobile elements in human microbiomes
Supervised learning approach to long read classification
RNA Splice Aware Mapper
Horizontal silicon nanowires for surface-enhanced Raman spectroscopy
Informatika - materijali za predavanja na Vojnom studijskom programu
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
Fast and accurate de novo genome assembly from long uncorrected reads
Silicon Nanowires Substrates Fabrication for Ultra-Sensitive Surface Enhanced Raman Spectroscopy Sensors
Evaluation of tools for long read RNA-seq splice- aware alignment
RNA Transcriptome Mapping with GraphMap
Trade-offs in query and target indexing for the selection of candidates in protein homology searches
Ra – Rapid de novo genome assembler
MinCall | MinION end2end convolutional deep learning basecaller
Inference of influence in social networks
Read classification using semi-supervised deep learning
De Novo Assembly using Unsupervised Read Categorization
De Novo Assembly using Semi-Supervised Read Categorization
Unsupervised Learning of Sequencing Read Types
Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia
Differentiating between Exogenous and Endogenous Information Propagation in Social Networks
Algorithms for Layout Phase of De Novo Genome Assembly
Rala - Rapid layout module for de novo genome assembly
SIFT missense predictions for genomes
SWORD—a highly efficient protein database search
Big data in the age of genomics
Racon - Rapid consensus module for raw de novo genome assembly of long uncorrected reads
TGTP-DB – a database for extracting genome, transcriptome and proteome data using taxonomy
SWORD—a highly efficient protein database search
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
SW#db: GPU-Accelerated Exact Sequence Similarity Database Search
Continuum model of gene expression
Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations
Some new results on assessment of Q-gram filter efficiency
ExoLocator—an online view into genetic makeup of vertebrate proteins
Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures
Protein database search optimization based on CUDA and MPI
Aspects of DNA Assembly Acceleration on Reconfigurable Platforms
Approaches to DNA de novo Assembly
Epidemic centrality — is there an underestimated epidemic impact of network peripheral nodes?
From Short to Long Reads: Benchmarking Assembly Tools
Proteins and Nucleic Acids in Space and Time
SW#–GPU-enabled exact alignments on genome scale
FastSIR algorithm : A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible–infected–recovered compartment model
BioMe : biologically relevant metals
Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks
Prediction of interacting protein residues using sequence and structure data.
CUDA implementation of the algorithm for simulating the epidemic spreading over large networks
Phase diagram of epidemic spreading — unimodal vs. bimodal probability distributions
Optimiranje sigurnosnih pravila vatrozida
Poboljšani algoritam za izbor i provjeru kvalitete najboljih multivarijacijskih modela odnosa strukture i svojstava molekula
Epidemic centrality – identifying “superspreaders” in complex networks
Parallel Protein Docking Tool
Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests
Comparison of the RADIUS and Diameter Protocols
PSAIA - Protein Structure and Interaction Analyzer
Metals in proteins: correlation between the metal- ion type, coordination number and the amino-acid residues involved in the coordination
Correlating protein surface shape and hydrophobicity using spherical harmonical expansions
Prediction of protein-protein hetero interaction sites from local sequence information using Random Forest
Protecting and controlling Virtual LANs by Linux router-firewall
Efikasno upravljanje e-mailom
Sigurnost bežičnih LAN-ova
Mobile content efficiency and business model
Model naplate sadržaja i usluga u mobilnim paketskim mrežama
Modeli naplate sadržaja u mobilnim paketskim mrežama
Nastava
Sveučilišni preddiplomski
- Algoritmi i strukture podataka (Nositelj)
- Algoritmi i strukture podataka (Nositelj)
- Bioinformatika 1 (Nositelj, Nositelj, Nositelj)
- Bioinformatika 1 (Nositelj, Nositelj)
- Projekt iz programske potpore (Predavanja)
- Projekt iz programske potpore (Predavanja)
- Projekt R (Predavanja)
- Završni rad (Predavanja)
Sveučilišni diplomski
- Bioinformatika 2 (Nositelj)
- Bioinformatika 2 (Nositelj)
- Kompleksne mreže (Nositelj)
- Kompleksne mreže (Nositelj)
- Kreativni laboratorij (Nositelj)
- Uvod u znanost o podacima (Nositelj)
- Uvod u znanost o podacima (Nositelj)
- Diplomski projekt (Predavanja)
- Diplomski projekt (Predavanja)
- Diplomski rad (Predavanja)
- Diplomski seminar (Predavanja)
- Mentorski seminar (Predavanja)
Poslijediplomski doktorski
- Algoritmi u bioinformatici (Nositelj)
Kompetencije
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Computational and artificial intelligence
Artificial intelligence Computation theory -
Computers and information processing
Network theory (graphs) DNA computing