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Benchmarking metagenomic classification tools for long read sequencing data
Deep learning approach to determining the type of long reads
A step towards neural genome assembly
Detecting Base Modifications in DNA Sequences
Yet another de novo genome assembler
Supervised learning approach to long read classification
RNA Splice Aware Mapper
Approaches to metagenomic classification and assembly
Disentangling Sources of Influence in Online Social Networks
Hybrid metagenomic assembly enables high- resolution analysis of resistance determinants and mobile elements in human microbiomes
Horizontal silicon nanowires for surface-enhanced Raman spectroscopy
Informatika - materijali za predavanja na Vojnom studijskom programu
Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia
Differentiating between Exogenous and Endogenous Information Propagation in Social Networks
Unsupervised Learning of Sequencing Read Types
Algorithms for Layout Phase of De Novo Genome Assembly
De Novo Assembly using Semi-Supervised Read Categorization
De Novo Assembly using Unsupervised Read Categorization
MinCall | MinION end2end convolutional deep learning basecaller
Read classification using semi-supervised deep learning
Ra – Rapid de novo genome assembler
Rala - Rapid layout module for de novo genome assembly
Evaluation of tools for long read RNA-seq splice- aware alignment
Trade-offs in query and target indexing for the selection of candidates in protein homology searches
Inference of influence in social networks
RNA Transcriptome Mapping with GraphMap
Fast and accurate de novo genome assembly from long uncorrected reads
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
Racon - Rapid consensus module for raw de novo genome assembly of long uncorrected reads
SWORD—a highly efficient protein database search
Big data in the age of genomics
SWORD—a highly efficient protein database search
TGTP-DB – a database for extracting genome, transcriptome and proteome data using taxonomy
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
SIFT missense predictions for genomes
SW#db: GPU-Accelerated Exact Sequence Similarity Database Search
Continuum model of gene expression
Some new results on assessment of Q-gram filter efficiency
Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations
Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures
ExoLocator—an online view into genetic makeup of vertebrate proteins
Aspects of DNA Assembly Acceleration on Reconfigurable Platforms
Proteini i nukleinske kiseline u vremenu i prostoru
Epidemic centrality — is there an underestimated epidemic impact of network peripheral nodes?
Protein database search optimization based on CUDA and MPI
SW#–GPU-enabled exact alignments on genome scale
From Short to Long Reads: Benchmarking Assembly Tools
Approaches to DNA de novo Assembly
FastSIR algorithm : A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible–infected–recovered compartment model
Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks
BioMe : biologically relevant metals
CUDA implementation of the algorithm for simulating the epidemic spreading over large networks
Prediction of interacting protein residues using sequence and structure data.
Epidemic centrality – identifying “superspreaders” in complex networks
Phase diagram of epidemic spreading — unimodal vs. bimodal probability distributions
Parallel Protein Docking Tool
Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests
Računalna metoda za predviđanje mjesta proteinskih interakcija
Comparison of the RADIUS and Diameter Protocols
PSAIA - Protein Structure and Interaction Analyzer
Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination
Prediction of protein-protein hetero interaction sites from local sequence information using Random Forest
Koreliranje oblika površine i hidrofobnosti proteina korištenjem razvoja u kugline funkcije
Protecting and controlling Virtual LANs by Linux router-firewall
Efikasno upravljanje e-mailom
Mobile content efficiency and business model
Sigurnost bežičnih LAN-ova
Model naplate sadržaja i usluga u mobilnim paketskim mrežama
Modeli naplate sadržaja u mobilnim paketskim mrežama
Nastava
Sveučilišni preddiplomski
- Algoritmi i strukture podataka (Nositelj)
- Bioinformatika 1 (Nositelj)
- Projekt iz programske potpore (Predavanja)
- Projekt iz programske potpore (Predavanja)
- Projekt iz programske potpore (Predavanja)
- Projekt iz programske potpore (Predavanja)
- Projekt R (Predavanja)
- Završni rad (Predavanja)
Sveučilišni diplomski
- Bioinformatika 1 (Nositelj)
- Kreativni laboratorij (Nositelj)
- Diplomski projekt (Predavanja)
- Diplomski projekt (Predavanja)
- Diplomski projekt (Predavanja)
- Diplomski rad (Predavanja)
- Diplomski rad (Predavanja)
- Diplomski rad (Predavanja)
- Diplomski seminar (Predavanja)
- Diplomski seminar (Predavanja)
Poslijediplomski doktorski
- Bioinformatika 1 (Nositelj)
Kompetencije
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Computational and artificial intelligence
Artificial intelligence Computation theory -
Computers and information processing
Network theory (graphs) DNA computing