Na FER-u postoji više zaposlenika s imenom

    prof. dr. sc. Mile Šikić

    Vanjski suradnik, Zavod za elektroničke sustave i obradbu informacija

    Supervised learning approach to long read classification

    Vrček, Lovro ; Šikić, Mile
    Prošireni sažeci u zbornicima i časopisima, 2019.
    Fourth International Workshop on Data Science

    RNA Splice Aware Mapper

    Marić, Josip ; Križanović, Krešimir ; Šikić, Mile
    Druga sudjelovanja na skupovima, 2019.
    Fourth International Workshop on Data Science

    Approaches to metagenomic classification and assembly

    Marić, Josip ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2019.
    42nd International Convention on Information, Communication and Electronic Technology

    Disentangling Sources of Influence in Online Social Networks

    Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile
    Znanstveni i pregledni radovi, 2019.

    Hybrid metagenomic assembly enables high- resolution analysis of resistance determinants and mobile elements in human microbiomes

    Bertrand, Denis ; Shaw, Jim ; Kalathiyappan, Manesh ; Ng, Amanda Hui Qi ; Kumar, M. Senthil ; Li, Chenhao ; Dvornicic, Mirta ; Soldo, Janja Paliska ; Koh, Jia Yu ; Tong, Chengxuan ; Ng, Oon Tek ; Barkham, Timothy ; Young, Barnaby ; Marimuthu, Kalisvar ; Chng, Kern Rei ; Sikic, Mile ; Nagarajan, Niranjan
    Znanstveni i pregledni radovi, 2019.

    Horizontal silicon nanowires for surface-enhanced Raman spectroscopy

    Gebavi, Hrvoje ; Ristić, Davor ; Baran, Nikola ; Mikac, Lara ; Mohaček-Grošev, Vlasta ; Gotić, Marijan ; Šikić, Mile ; Ivanda, Mile
    Znanstveni i pregledni radovi, 2018.

    Informatika - materijali za predavanja na Vojnom studijskom programu

    Džapo, Hrvoje ; Podobnik, Vedran ; Pribanić, Tomislav ; Seder, Marija ; Šikić, Mile
    Ostalo, 2017.

    Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia

    Piškorec, Matija ; Antulov-Fantulin, Nino ; Miholić, Iva ; Šmuc, Tomislav ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2017.
    Complex Networks 2017

    Differentiating between Exogenous and Endogenous Information Propagation in Social Networks

    Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2017.
    Second International Workshop on Data Science

    Unsupervised Learning of Sequencing Read Types

    Tomljanović, Jan ; Šebrek, Tomislav ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2017.
    ICCBB 2017

    Algorithms for Layout Phase of De Novo Genome Assembly

    Vaser, Robert ; Šikić, Mile
    Prošireni sažeci u zbornicima i časopisima, 2017.
    Second International Workshop on Data Science

    De Novo Assembly using Semi-Supervised Read Categorization

    Šebrek, Tomislav ; Tomljanović, Jan ; Šikić, Mile
    Prošireni sažeci u zbornicima i časopisima, 2017.
    Second International Workshop on Data Science

    De Novo Assembly using Unsupervised Read Categorization

    Tomljanović, Jan ; Šebrek, Tomislav ; Šikić, Mile
    Prošireni sažeci u zbornicima i časopisima, 2017.
    Second International Workshop on Data Science

    MinCall | MinION end2end convolutional deep learning basecaller

    Miculinić, Neven ; Ratković, Marko ; Šikić, Mile
    Druga sudjelovanja na skupovima, 2017.
    2nd International workshop on deep learning for precision medicine, ECML-PKDD 2017

    Read classification using semi-supervised deep learning

    Šebrek, Tomislav ; Tomljanović, Jan ; Krapac, Josip ; Šikić, Mile
    Druga sudjelovanja na skupovima, 2017.
    2nd International workshop on deep learning for precision medicine, ECML-PKDD 2017

    Ra – Rapid de novo genome assembler

    Vaser, Robert ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2017.
    ISMB/ECCB 2017

    Rala - Rapid layout module for de novo genome assembly

    Vaser, Robert ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2017.
    ISMB/ECCB 2017

    Evaluation of tools for long read RNA-seq splice- aware alignment

    Križanović, Krešimir ; Echchiki, Amina ; Roux, Julien ; Šikić, Mile
    Znanstveni i pregledni radovi, 2017.

    Silicon Nanowires Substrates Fabrication for Ultra-Sensitive Surface Enhanced Raman Spectroscopy Sensors

    Gebavi, Hrvoje ; Mikac, Lara ; Marciuš, Marijan ; Šikić, Mile ; Mohaček-Grošev, Vlasta ; Janči, Tibor ; Vidaček, Sanja ; Hasanspahić, Emina ; Omanović Miklićanin, Enisa ; Ivanda, Mile
    Znanstveni i pregledni radovi, 2017.

    Trade-offs in query and target indexing for the selection of candidates in protein homology searches

    Ristov, Strahil ; Vaser Robert ; Šikić Mile
    Znanstveni radovi u zbornicima skupova, 2017.
    The Prague Stringology Conference

    Inference of influence in social networks

    Matija Piškorec, Nino Antulov-Fantulin, Iva Miholić, Tomislav Šmuc, Mile Šikić
    Sažeci u zbornicima i časopisima, 2017.
    CompleNet 2017

    RNA Transcriptome Mapping with GraphMap

    Križanović, Krešimir ; Sović, Ivan ; Krpelnik, Ivan ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2017.
    13th International Symposium, ISBRA 2017

    Fast and accurate de novo genome assembly from long uncorrected reads

    Vaser, Robert ; Sović, Ivan ; Nagaranjan, Niranjan ; Šikić, Mile
    Znanstveni i pregledni radovi, 2017.

    Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance

    Šošić, Martin ; Šikić, Mile
    Znanstveni i pregledni radovi, 2017.

    Racon - Rapid consensus module for raw de novo genome assembly of long uncorrected reads

    Vaser, Robert ; Sović, Ivan ; Nagarajan, Niranjan ; Šikić, Mile
    Druga sudjelovanja na skupovima, 2016.
    London calling conference 2016

    SWORD—a highly efficient protein database search

    Vaser, Robert ; Pavlović, Dario ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2016.
    ECCB 2016: THE 15TH EUROPEAN CONFERENCE ON COMPUTATIONAL BIOLOGY

    Big data in the age of genomics

    Šikić, Mile
    Druga sudjelovanja na skupovima, 2016.
    Data Science Monetization 2016 Conference

    SWORD—a highly efficient protein database search

    Vaser, Robert ; Pavlović, Dario ; Šikić, Mile
    Znanstveni i pregledni radovi, 2016.

    TGTP-DB – a database for extracting genome, transcriptome and proteome data using taxonomy

    Križanović, Krešimir ; Marinović, Mladen ; Bulović, Ana ; Vaser, Robert ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2016.
    39th International Convention Mipro 2016, Distributed Computing, Visualization and Biomedical Engineering /DC VIS

    Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads

    Sović, Ivan ; Križanović, Krešimir ; Skala, Karolj ; Šikić, Mile
    Znanstveni i pregledni radovi, 2016.

    Fast and sensitive mapping of nanopore sequencing reads with GraphMap

    Sović, Ivan ; Šikić, Mile ; Wilm Andreas ; Fenlon, Shannon Nicole ; Chen, Swaine
    Znanstveni i pregledni radovi, 2016.

    SIFT missense predictions for genomes

    Vaser, Robert ; Adusumalli, Swarnaseetha ; Ngak Leng, Sim ; Šikić, Mile ; Ng, Pauline C.
    Znanstveni i pregledni radovi, 2016.

    SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

    Korpar, Matija ; Šošić, Martin ; Blažeka, Dino ; Šikić, Mile
    Znanstveni i pregledni radovi, 2015.

    Continuum model of gene expression

    Novak, Andrej, Racz, Gabriela C. ; Sedmak, Goran ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2015.
    Thirteenth International Seminar: Mathematical Models & Modeling in Laser Plasma Processes & Advanced Science Technologies

    Some new results on assessment of Q-gram filter efficiency

    Novak, Andrej ; Križanović, Krešimir ; Lančić, Alen ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2015.
    International Symposium on Image and Signal Processing and Analysis (9 ; 2015))

    Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations

    Antulov-Fantulin, Nino ; Lančić, Alen ; Šmuc, Tomislav ; Štefančić, Hrvoje ; Šikić, Mile
    Znanstveni i pregledni radovi, 2015.

    Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures

    Antulov-Fantulin, Nino ; Lančić, Alen ; Štefančić, Hrvoje ; Šikić, Mile ; Šmuc, Tomislav
    Znanstveni radovi u zbornicima skupova, 2015.
    IEEE Eighth International Conference on Self-Adaptive and Self-Organizing Systems Workshops

    ExoLocator—an online view into genetic makeup of vertebrate proteins

    Khoo, Aik-Aun ; Ogrizek-Tomaš, Mario ; Bulović, Ana ; Korpar, Matija ; Gurler, Ece ; Slijepčević, Ivan ; Šikić, Mile ; Mihalek, Ivana
    Znanstveni i pregledni radovi, 2014.

    Aspects of DNA Assembly Acceleration on Reconfigurable Platforms

    Sović, Ivan ; Šikić, Mile ; Skala, Karolj
    Znanstveni radovi u zbornicima skupova, 2013.
    IT SYSTEMS 2013

    Proteini i nukleinske kiseline u vremenu i prostoru

    Tomić, Sanja ; Brkić, Hrvoje ; Grabar Branilović, Marina ; Tomić, Antonija ; Branimir, Bertoša ; Mile, Šikić
    Drugi radovi u zbornicima skupova, 2013.
    Bioinformatics and biological physics

    Epidemic centrality — is there an underestimated epidemic impact of network peripheral nodes?

    Šikić, Mile ; Lančić, Alen ; Antulov-Fantulin, Nino ; Štefančić, Hrvoje
    Znanstveni i pregledni radovi, 2013.

    Protein database search optimization based on CUDA and MPI

    Pavlović, Dario ; Vaser, Robert ; Korpar, Matija ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2013.
    The 36th international ICT convention MIPRO

    SW#–GPU-enabled exact alignments on genome scale

    Korpar, Matija ; Šikić, Mile
    Znanstveni i pregledni radovi, 2013.

    From Short to Long Reads: Benchmarking Assembly Tools

    Sović, Ivan ; Skala, Karolj ; Šikić, Mile
    Sažeci u zbornicima i časopisima, 2013.
    ISMB/ECCB 2013

    Approaches to DNA de novo Assembly

    Sović, Ivan ; Skala, Karolj ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2013.
    MIPRO

    FastSIR algorithm : A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible–infected–recovered compartment model

    Antulov-Fantulin, Nino ; Lančić, Alen ; Štefančić, Hrvoje ; Šikić, Mile
    Znanstveni i pregledni radovi, 2013.

    Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks

    Sandhu, Kuljeet Singh ; Li, Guoliang ; Poh, Huay Mei ; Quek , Yu Ling Kelly ; Sia , Yee Yen ; Peh, Su Qin ; Mulawadi, Fabianus Hendriyan ; Lim , Joanne ; Šikić, Mile ; Menghi, Francesca ; Thalamuthu, Anbupalam ; Sung , Wing Kin ; Ruan, Xiaoan ; Fullwood, Melissa Jane ; Liu, Edison ; Csermely , Peter ; Ruan, Yijun
    Znanstveni i pregledni radovi, 2012.

    BioMe : biologically relevant metals

    Tus, Alan ; Rakipović, Alen ; Peretin, Goran ; Tomić, Sanja ; Šikić, Mile
    Znanstveni i pregledni radovi, 2012.

    CUDA implementation of the algorithm for simulating the epidemic spreading over large networks

    Šošić, Matija ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2012.
    35. međunarodni skup MIPRO

    Prediction of interacting protein residues using sequence and structure data.

    Franke, Vedran ; Šikić, Mile ; Vlahoviček, Kristian
    Poglavlja u knjigama, 2012.

    Epidemic centrality – identifying “superspreaders” in complex networks

    Šikić, Mile ; Lančić, Alen ; Antulov-Fantulin, Nino ; Štefančić, Hrvoje
    Sažeci u zbornicima i časopisima, 2011.
    European Conference on Complex Systems 2011

    Phase diagram of epidemic spreading — unimodal vs. bimodal probability distributions

    Lančić, Alen ; Antulov-Fantulin, Nino ; Šikić, Mile ; Štefančić, Hrvoje
    Znanstveni i pregledni radovi, 2011.

    Parallel Protein Docking Tool

    Sović, Ivan ; Antulov-Fantulin, Nino ; Čanadi, Igor ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2010.
    International Convention on Information and Communication Technology, Electronics and Microelectronics (33 ; 2010)

    Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests

    Šikić, Mile ; Tomić, Sanja ; Vlahoviček, Kristian
    Znanstveni i pregledni radovi, 2009.

    Računalna metoda za predviđanje mjesta proteinskih interakcija

    Šikić, Mile
    Doktorske disertacije, 2008.

    Comparison of the RADIUS and Diameter Protocols

    Stanke, Mladen ; Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2008.
    Information Technology Interfaces, 2008. ITI 2008. 30th International Conference on

    PSAIA - Protein Structure and Interaction Analyzer

    Mihel, Josip ; Šikić, Mile ; Tomić, Sanja ; Jeren Branko ; Vlahoviček, Kristian
    Znanstveni i pregledni radovi, 2008.

    Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination

    Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja
    Znanstveni i pregledni radovi, 2008.

    Prediction of protein-protein hetero interaction sites from local sequence information using Random Forest

    Šikić, Mile ; Jeren, Branko ; Vlahoviček, Kristian
    Sažeci u zbornicima i časopisima, 2007.
    The 2nd Opatija Meeting on Computational Solutions in the Life Sciences

    Koreliranje oblika površine i hidrofobnosti proteina korištenjem razvoja u kugline funkcije

    Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja
    Sažeci u zbornicima i časopisima, 2007.
    The 2nd Opatija Meeting on Computational Solutions in the Life Sciences

    Protecting and controlling Virtual LANs by Linux router-firewall

    Katić, Tihomir ; Šikić, Mile ; Šikić, Krešimir
    Znanstveni radovi u zbornicima skupova, 2005.
    Information Technology Interfaces

    Efikasno upravljanje e-mailom

    Šikić, Mile
    Stručni radovi u zbornicima skupova, 2004.
    E-biz 2004

    Mobile content efficiency and business model

    Šikić, Mile
    Drugi radovi u zbornicima skupova, 2003.
    Major Cities of Europe IT User's Group

    Sigurnost bežičnih LAN-ova

    Šikić, Mile
    Stručni radovi u zbornicima skupova, 2003.
    KOM 2003, Komunikacijske tehnologije i norme u informatici

    Model naplate sadržaja i usluga u mobilnim paketskim mrežama

    Šikić, Mile
    Znanstveni radovi u zbornicima skupova, 2003.
    MIPRO-2003

    Modeli naplate sadržaja u mobilnim paketskim mrežama

    Šikić, Mile
    Magistarski radovi, 2002.

    Nastava

    Sveučilišni preddiplomski

    Sveučilišni diplomski

    Poslijediplomski doktorski

    Kompetencije

    • Computational and artificial intelligence
      Artificial intelligence Computation theory
    • Computers and information processing
      Network theory (graphs) DNA computing

    Osobni podaci

    Godina diplomiranja:
    1996.
    Godina magistriranja:
    2002.
    Godina doktoriranja:
    2008.
    Na zavodu od:
    1997.