izv. prof. dr. sc. Mirjana Domazet-Lošo

Associate professor, Department of Applied Computing

Location:
Public phone number:
6129-583
Internal phone number:
583

Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages

Domazet-Lošo, Mirjana; Široki, Tin; Šimičević, Korina; Domazet-Lošo, Tomislav
2024.
Nature communications

Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2023.

Pleomorphic Variants of Borreliella (syn. Borrelia) burgdorferi Express Evolutionary Distinct Transcriptomes

Čorak, Nina ; Anniko, Sirli ; Daschkin-Steinborn, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj ; Tušar, Anja ; Maxeiner, Horst-Günter ; Domazet-Lošo, Mirjana ; Nicolaus, Carsten ; Domazet-Lošo, Tomislav
2023.
International journal of molecular sciences

Machine learning methods for soil microbiome prediction

Šandrk, Marko
2022.

Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2022.

A novel time-lapse imaging method for studying developing bacterial biofilms

Futo, Momir ; Široki, Tin ; Koska, Sara ; Čorak, Nina ; Tušar, Anja ; Domazet-Lošo, Mirjana ; Tomislav Domazet-Lošo
2022.
Scientific reports

Application of machine learning methods to genome-wide prediction of enhancers

Milisavljević, Alexandra
2022.

Determining advertisement relevancy based on user's search query

Lugar, Barbara
2022.

Detection of spoofing attacks on the facial recognition system

Zlovolić, Matija
2021.

Embryo-like features in developing Bacillus subtilis biofilms

Futo, Momir ; Opašić, Luka ; Koska, Sara ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Lenuzzi, Maša ; Kifer, Domagoj ; Domazet-Lošo, Mirjana ; Vlahoviček, Kristian ; Mijakovic, Ivan ; Domazet-Lošo, Tomislav
2021.
Molecular biology and evolution

Detecting arrhythmia in ECG recordings using recurrent neural network

Belić, Bruno
2021.

Efficient referential genome compression

Radanović, Juraj
2021.

Phylogeny­-Ontogeny Correlations: Lessons From Microbial Biofilms

Futo, Momir ; Opašić, Luka ; Koska, Sara ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet­ - Lošo, Mirjana ; Vlahoviček, Kristian ; Mijakovic, Ivan ; Domazet­ - Lošo, Tomislav
2021.
FEBS Open Bio

Cuckoo filter improvements

Knezović, Veronika
2021.

Transcriptome profiling of Borrelia burgdorferi pleomorphic variants

Čorak, Nina ; Daschkin, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Anniko, Sirli ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj ; Vlahoviček, Kristian ; Maxeiner, Horst-Günter ; Domazet-Lošo, Mirjana ; Nicolaus, Carsten ; Domazet-Lošo, Tomislav
2021.

Phylogeny-ontogeny correlations in Bacillus subtilis biofilms

Koska, Sara ; Futo, Momir ; Opašić, Luka ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet-Lošo, Mirjana ; Vlahoviček, Kristian ; Mijaković, Ivan ; Domazet-Lošo, Tomislav
2020.

Clustering methods for genetic recombination detection

Tušek, Robert
2020.

Application of Networks in Epidemiology

Bušić, Bruno
2020.

Protein-protein interaction prediction using convolutional neural network

Segarić, Lucija
2020.

Machine learning approach to estimation of drug consumption risk

Jurič, Martina
2020.

Extended dynamic cuckoo filter

Radović, Matej
2020.

Referential genome compression

Čeple, Kristijan
2020.

Correspondence analysis applied to large scale Evo-Devo data

Široki, Tin ; Koska, Sara ; Čorak, Nina ; Futo, Momir ; Domazet-Lošo, Tomislav ; Domazet-Lošo, Mirjana
2019.

Memory-efficient genotype storage

Šandrk, Marko
2019.

Blood Cell Image Classification for Leukemia Detection

Belić, Bruno
2019.

Network Traversal Algorithms

Škoro, Matej
2019.

Phylogenetic Tree Construction using Maximum Parsimony and Maximum Likelihood

Milisavljević, Alexandra
2019.

Cancer Classification using Gene Expression

Lugar, Barbara
2019.

Artificial intelligence alignment using debate

Dušić, Sandi
2019.

FM-tree

Knezović, Veronika
2019.

Modelling spatial development of biological systems

Bosnar, Lovro
2019.

Protein Structure Visualization

Sente, Toni
2019.

Application of machine learning to predicting cancer drug response

Stjepanović, Mateo
2019.

FM-index

Radanović, Juraj
2019.

Image classification for skin cancer detection

Zlovolić, Matija
2019.

Macroevolutionary reconstruction of glycosylation from the perspective of homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2019.
Glycoconjugate journal

Metagenomics-based disease prediction

Široki, Tin
2018.

Application of machine learning in metagenomics

Tušek, Robert
2018.

Methods for the longest common prefix array construction

Mesarić, Marko
2018.

Dynamic FM-index

Radović, Matej
2018.

Compressed Suffix Arrays

Božić, Anita
2018.

Image-Based Phylogenetic Classification

Kodžoman, Vinko
2017.

Protein Secondary Structure Prediction

Cikojević, Zvonimir
2017.

Implementing Suffix-Array Construction Algorithms Scalable to Mammalian Genomes

Krišto, Zoran
2017.

Wavelet Tree Construction of Genome and Protein Sequences

Despot, Ivan
2017.

Software for Comparing Eukaryotic Genomes

Sente, Toni
2017.

Distance-Based Phylogenetic Tree Construction Methods

Gajski, Nikola
2017.

Algorithm for Paging Large-Scale Genome Database

Stjepanović, Mateo
2017.

Application of Hidden Markov Models for Searching Nucleotide Sequences

Medvidović, Krešimir
2017.

Single Nucleotide Polymorphism Detection

Segarić, Lucija
2017.

gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances

Domazet-Lošo, Mirjana ; Domazet-Lošo, Tomislav
2016.
PLoS One

Hybrid de novo genome assembly

Franjić, Marko
2016.

Finding overlapping reads for de novo genome assembly

Široki, Tin
2016.

Memory-Efficient Storage of Multiple Genomes of the Same Species

Kodžoman, Vinko
2015.

The Lempel-Ziv self-index with an application to genome analysis

Krišto, Zoran
2015.

Alignment-free detection of horizontal gene transfer between closely related bacterial genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2011.
Mobile genetic elements

Alignment-free detection of local similarity among viral and bacterial genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2011.
Bioinformatics

Algorithms for Efficient Alignment-Free Sequence Comparison

Domazet-Lošo, Mirjana
2010.

Estimating Mutation Distances from Unaligned Genomes

Haubold, Bernhard ; Pfaffelhuber, Peter ; Domazet-Lošo, Mirjana ; Wiehe, Thomas
2009.
Journal of computational biology

Efficient Estimation of Pairwise Distances between Genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2009.
Bioinformatics

An Alignment-Free Distance Measure for Closely Related Genomes

Haubold, Bernhard ; Domazet-Lošo, Mirjana ; Wiehe, Thomas
2008.
Lecture notes in computer science

Comparison of Data Mining Techniques Applied to Biological Data

Domazet-Lošo, Mirjana
2006.

Data Warehouse as a Part of the Higher Education Information System in Croatia

Baranović, Mirta ; Madunić, Mirjana ; Mekterović, Igor
2003.

ISVU - Higher Education Information System

Anzil, Jasenka ; Baranović, Mirta ; Brkić, Ljiljana ; Domazet-Lošo, Mirjana ; Jurinčić, Ana ; Kalafatić, Valdi ; Krajcar, Slavko ; Kranjčec, Denis ; Kremenjaš, Davorin ; Križanović, Krešimir ; Lišnjić, Dino ; Ljubešić, Marija ; Mačkala, Ladislav ; Matijašević, Boris ; Mekterović, Igor ; Orel, Ognjen ; Pukljak Zoković, Dubravka ; Rončević, Hrvoje ; Zakošek, Slaven ; Zoković, Hrvoje ; Žganec, Tomislav
2000.

University Undergraduate Study Warehouse

Madunić, Mirjana
1999.

Teaching

University undergraduate

University graduate

Postgraduate doctoral study programme

Competences

  • Engineering in medicine and biology
    Bioinformatics Computational biology
  • Mathematics
    Algorithm design and anlaysis Algorithms
  • Computational and artificial intelligence
    Machine learning

Personal data

mr.sc. graduation year:
2006.
PhD graduation year:
2010.