izv. prof. dr. sc. Mirjana Domazet-Lošo

Associate professor, Department of Applied Computing

Convergence in Amino Acid Outsourcing Between Animals and Predatory Bacteria

Kasalo, Niko; Domazet-Lošo, Mirjana; Domazet-Lošo, Tomislav;
2025.
International journal of molecular sciences

Bacterial Amino Acid Auxotrophies Enable Energetically Costlier Proteomes

Kasalo, Niko; Domazet-Lošo, Tomislav; Domazet-Lošo, Mirjana
2025.
International journal of molecular sciences

Developmental phylotranscriptomics in grapevine suggests an ancestral role of somatic embryogenesis

Koska, Sara; Leljak-Levanić, Dunja; Malenica, Nenad; Bigović Villi, Kian; Futo, Momir; Čorak, Nina; Jagić, Mateja; Ivanić, Ariana; Tušar, Anja; Kasalo, Niko; Domazet-Lošo, Mirjana; Vlahoviček, Kristian; Domazet-Lošo, Tomislav
2025.
Communications biology

DNA sequence simulation based on Gillespie algorithm

Topolko, Lucija
2024.

Efficient algorithm for finding maximum-likelihood phylogeny trees

Krajinović, Mirta
2024.

Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages

Domazet-Lošo, Mirjana; Široki, Tin; Šimičević, Korina; Domazet-Lošo, Tomislav
2024.
Nature communications

Deep-learning based DNA sequence classification

Matečić, Jelena
2024.

Deep-learning based scRNA-seq cell type identification

Cavalli, Luka
2024.

Identification of bacterial antibiotic resistance genes

Žagar, Marko
2024.

Detection of Parkinson's disease based on biomedical voice measurements

Crvelin, Lucia
2024.

Machine learning based analysis of diabetes datasets

Kaštelan, Niko
2024.

Diabetes prediction using metagenomic datasets

Kaštela, Bruna
2023.

Deep learning-based protein sequence clustering

Šarić, Ivona
2023.

Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2023.

Implementation of the efficient enhanced suffix-array construction algorithm

Jurić Fot, Hana
2023.

Phylogenetic tree construction and visualization

Benčik, Lana
2023.

Hybrid referential genome compression

Penić, Jana
2023.

Using MR images for brain tumor detection

Mihaljević, Ivan
2023.

Pleomorphic Variants of Borreliella (syn. Borrelia) burgdorferi Express Evolutionary Distinct Transcriptomes

Čorak, Nina ; Anniko, Sirli ; Daschkin-Steinborn, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj ; Tušar, Anja ; Maxeiner, Horst-Günter ; Domazet-Lošo, Mirjana ; Nicolaus, Carsten ; Domazet-Lošo, Tomislav
2023.
International journal of molecular sciences

FM-index based long reads error correction

Čeple, Kristijan
2023.

Prediction of classical music composers based on audio pieces stored in MIDI format

Grgurić, Lara
2023.

Urinary biomarkers for detection of pancreatic cancer

Ban, Idora
2023.

Protein sequence clustering in the context of gene family evolution

Šimičević, Korina
2023.

Deep learning-based pairwise alignment of protein sequences

Furač, Ivan
2023.

Deep learning-based detection of viral subtypes

Martinović, Jana
2023.

Parametrized selection of related protein sequences required for the estimation of gene age

Ribarić, Antea
2023.

Automated CT-MRI image fusion for surgical planning

Colarić, Borna
2023.

A novel time-lapse imaging method for studying developing bacterial biofilms

Futo, Momir ; Široki, Tin ; Koska, Sara ; Čorak, Nina ; Tušar, Anja ; Domazet-Lošo, Mirjana ; Tomislav Domazet-Lošo
2022.
Scientific reports

Predicting the progression of HIV infection based on viral RNA sequences

Ivanković, Toni
2022.

Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2022.

Application of machine learning methods to genome-wide prediction of enhancers

Milisavljević, Alexandra
2022.

Referential genome compression

Palić, Magdalena
2022.

Malignant tumor detection in microscopic images of tumor tissue

Aleksić, Lucija
2022.

Machine learning methods for soil microbiome prediction

Šandrk, Marko
2022.

Genome alignment based on hidden Markov model

Kuleš, Jurica
2022.

Determining advertisement relevancy based on user's search query

Lugar, Barbara
2022.

Application of machine learning methods to genome-wide prediction of enhancers

Milisavljević, Alexandra
2022.

Cuckoo filter improvements

Knezović, Veronika
2021.

Embryo-like features in developing Bacillus subtilis biofilms

Futo, Momir ; Opašić, Luka ; Koska, Sara ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Lenuzzi, Maša ; Kifer, Domagoj ; Domazet-Lošo, Mirjana ; Vlahoviček, Kristian ; Mijakovic, Ivan ; Domazet-Lošo, Tomislav
2021.
Molecular biology and evolution

Detecting arrhythmia in ECG recordings using recurrent neural network

Belić, Bruno
2021.

Detection of spoofing attacks on the facial recognition system

Zlovolić, Matija
2021.

Application of machine learning for detecting gut microbiota composition in persons with autism spectrum disorder

Batagelj, Frane
2021.

Efficient referential genome compression

Radanović, Juraj
2021.

Application of machine learning for predicting the age of a child from X-ray hand images

Ribarić, Antea
2021.

Application of classification methods for predicting the admission of COVID-19 patients to intensive care unit

Furač, Ivan
2021.

Transcriptome profiling of Borrelia burgdorferi pleomorphic variants

Čorak, Nina ; Daschkin, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Anniko, Sirli ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj ; Vlahoviček, Kristian ; Maxeiner, Horst-Günter ; Domazet-Lošo, Mirjana ; Nicolaus, Carsten ; Domazet-Lošo, Tomislav
2021.

Application of classification methods for predicting a possible heart failure

Matečić, Jelena
2021.

Referential compression of genomic data sets

Šimičević, Korina
2021.

Protein clustering using k-means algorithm

Tomić, Dora
2021.

Protein clustering using MCL algorithm

Martinović, Jana
2021.

Implementation of the efficient suffix array construction algorithm

Šarić, Ivona
2021.

Phylogeny­-Ontogeny Correlations: Lessons From Microbial Biofilms

Futo, Momir ; Opašić, Luka ; Koska, Sara ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet­ - Lošo, Mirjana ; Vlahoviček, Kristian ; Mijakovic, Ivan ; Domazet­ - Lošo, Tomislav
2021.
FEBS Open Bio

Referential genome compression

Čeple, Kristijan
2020.

Clustering methods for genetic recombination detection

Tušek, Robert
2020.

Machine learning approach to estimation of drug consumption risk

Jurič, Martina
2020.

Protein-protein interaction prediction using convolutional neural network

Segarić, Lucija
2020.

Extended dynamic cuckoo filter

Radović, Matej
2020.

Machine learning approach to estimation of drug consumption risk

Jurič, Martina
2020.

Phylogeny-ontogeny correlations in Bacillus subtilis biofilms

Koska, Sara ; Futo, Momir ; Opašić, Luka ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet-Lošo, Mirjana ; Vlahoviček, Kristian ; Mijaković, Ivan ; Domazet-Lošo, Tomislav
2020.

Application of k-means clustering algorithm to gene clustering

Prebeg, Adela
2020.

Application of Networks in Epidemiology

Bušić, Bruno
2020.

Phylogenetic Tree Construction

Gajski, Nikola
2020.

Clustering methods for genetic recombination detection

Tušek, Robert
2020.

Protein-protein interaction prediction using convolutional neural network

Segarić, Lucija
2020.

Extended dynamic cuckoo filter

Radović, Matej
2020.

FM-tree

Knezović, Veronika
2019.

Protein Structure Visualization

Sente, Toni
2019.

Modelling spatial development of biological systems

Bosnar, Lovro
2019.

Network Traversal Algorithms

Škoro, Matej
2019.

Image classification for skin cancer detection

Zlovolić, Matija
2019.

Memory-efficient genotype storage

Šandrk, Marko
2019.

Blood Cell Image Classification for Leukemia Detection

Belić, Bruno
2019.

Artificial intelligence alignment using debate

Dušić, Sandi
2019.

Macroevolutionary reconstruction of glycosylation from the perspective of homo sapiens genome

Kifer, Domagoj ; Ledinski, Maja ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav
2019.
Glycoconjugate journal

Cancer Classification using Gene Expression

Lugar, Barbara
2019.

Correspondence analysis applied to large scale Evo-Devo data

Široki, Tin ; Koska, Sara ; Čorak, Nina ; Futo, Momir ; Domazet-Lošo, Tomislav ; Domazet-Lošo, Mirjana
2019.

FM-index

Radanović, Juraj
2019.

Application of machine learning to predicting cancer drug response

Stjepanović, Mateo
2019.

Phylogenetic Tree Construction using Maximum Parsimony and Maximum Likelihood

Milisavljević, Alexandra
2019.

Metagenomics-based disease prediction

Široki, Tin
2018.

Dynamic FM-index

Radović, Matej
2018.

Methods for the longest common prefix array construction

Mesarić, Marko
2018.

Compressed Suffix Arrays

Božić, Anita
2018.

Application of machine learning in metagenomics

Tušek, Robert
2018.

Distance-Based Phylogenetic Tree Construction Methods

Gajski, Nikola
2017.

Image-Based Phylogenetic Classification

Kodžoman, Vinko
2017.

Software for Comparing Eukaryotic Genomes

Sente, Toni
2017.

Single Nucleotide Polymorphism Detection

Segarić, Lucija
2017.

Protein Secondary Structure Prediction

Cikojević, Zvonimir
2017.

Algorithm for Paging Large-Scale Genome Database

Stjepanović, Mateo
2017.

Implementing Suffix-Array Construction Algorithms Scalable to Mammalian Genomes

Krišto, Zoran
2017.

Application of Hidden Markov Models for Searching Nucleotide Sequences

Medvidović, Krešimir
2017.

Wavelet Tree Construction of Genome and Protein Sequences

Despot, Ivan
2017.

Hybrid de novo genome assembly

Franjić, Marko
2016.

Finding overlapping reads for de novo genome assembly

Široki, Tin
2016.

gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances

Domazet-Lošo, Mirjana ; Domazet-Lošo, Tomislav
2016.
PLoS One

The Lempel-Ziv self-index with an application to genome analysis

Krišto, Zoran
2015.

Memory-Efficient Storage of Multiple Genomes of the Same Species

Kodžoman, Vinko
2015.

Alignment-free detection of horizontal gene transfer between closely related bacterial genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2011.
Mobile genetic elements

Alignment-free detection of local similarity among viral and bacterial genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2011.
Bioinformatics

Algorithms for Efficient Alignment-Free Sequence Comparison

Domazet-Lošo, Mirjana
2010.

Efficient Estimation of Pairwise Distances between Genomes

Domazet-Lošo, Mirjana ; Haubold, Bernhard
2009.
Bioinformatics

Estimating Mutation Distances from Unaligned Genomes

Haubold, Bernhard ; Pfaffelhuber, Peter ; Domazet-Lošo, Mirjana ; Wiehe, Thomas
2009.
Journal of computational biology

An Alignment-Free Distance Measure for Closely Related Genomes

Haubold, Bernhard ; Domazet-Lošo, Mirjana ; Wiehe, Thomas
2008.
Lecture notes in computer science

Comparison of Data Mining Techniques Applied to Biological Data

Domazet-Lošo, Mirjana
2006.

Data Warehouse as a Part of the Higher Education Information System in Croatia

Baranović, Mirta ; Madunić, Mirjana ; Mekterović, Igor
2003.

ISVU - Higher Education Information System

Anzil, Jasenka ; Baranović, Mirta ; Brkić, Ljiljana ; Domazet-Lošo, Mirjana ; Jurinčić, Ana ; Kalafatić, Valdi ; Krajcar, Slavko ; Kranjčec, Denis ; Kremenjaš, Davorin ; Križanović, Krešimir ; Lišnjić, Dino ; Ljubešić, Marija ; Mačkala, Ladislav ; Matijašević, Boris ; Mekterović, Igor ; Orel, Ognjen ; Pukljak Zoković, Dubravka ; Rončević, Hrvoje ; Zakošek, Slaven ; Zoković, Hrvoje ; Žganec, Tomislav
2000.

University Undergraduate Study Warehouse

Madunić, Mirjana
1999.

Teaching

University undergraduate

University graduate

Postgraduate doctoral study programme

Competences

  • Engineering in medicine and biology
    Bioinformatics Computational biology
  • Mathematics
    Algorithm design and anlaysis Algorithms
  • Computational and artificial intelligence
    Machine learning

Personal data

mr.sc. graduation year:
2006.
PhD graduation year:
2010.