Bioinformatics 2
Data is displayed for academic year: 2024./2025.
Course Description
This course introduce students with: (i) basic probabilistic graphical models such as markov random fields and Bayesian networks (ii) hidden Markov models (iii) Bayes and causal inference (iv) application of the knowledge gained on problems in biology.
Study Programmes
University graduate
[FER3-EN] Data Science - profile
Recommended elective courses
(3. semester)
Learning Outcomes
- Describe and apply basic probabilistic graphical models such as markov random fields and Bayesian networks
- Explain hidden markov models
- Apply Bayes and causal inference to solving tasks
- Apply basic probabilistic graphical models to solving common biological problems
- Identify appropriate graphical probabilistic models that can be applied to a given domain
Forms of Teaching
Lectures
Lectures in the classroom
Independent assignmentsProject team work.
Grading Method
Continuous Assessment | Exam | |||||
---|---|---|---|---|---|---|
Type | Threshold | Percent of Grade | Threshold | Percent of Grade | ||
Seminar/Project | 0 % | 40 % | 0 % | 40 % | ||
Mid Term Exam: Written | 0 % | 25 % | 0 % | |||
Final Exam: Written | 40 % | 35 % | ||||
Exam: Written | 40 % | 60 % |
Week by Week Schedule
- Graphical models for computational biology
- Graphical models for computational biology
- Graphical models for computational biology
- Graphical models for computational biology
- Graphical models for computational biology
- Hidden Markov models for computational biology
- Hidden Markov models for computational biology
- Midterm exam
- Hidden Markov models for computational biology
- Bayesian inference for computational biology
- Bayesian inference for computational biology
- Bayesian inference for computational biology
- Application to complex biological systems
- Application to complex biological systems
- Final exam
Literature
(.), Probabilistic Graphical Models : Principles and Techniques, Daphne Koller and Nir Friedman,
Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison (.), Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press
For students
General
ID 223007
Winter semester
5 ECTS
L1 English Level
L1 e-Learning
30 Lectures
0 Seminar
0 Exercises
5 Laboratory exercises
0 Project laboratory
0 Physical education excercises
Grading System
90 Excellent
75 Very Good
60 Good
50 Sufficient