Algorithms in bioinformatics
Data is displayed for academic year: 2023./2024.
Basic facts on biological sequences. Sequential string search. Boyer-More algorithm. Indexed string search. Suffix tree. Suffix array. Approximate string search. String distances. Dynamic programming. Global and local alignment. Gaps, weights, substitution matrices. Multiple alignment, profiles, families. Algorithms in programs for sequence database searches FASTA, BLAST, GBLAST, BLAT. Problems in genome sequencing. Fragment assembly. Motif discovery. Tandem repeats. Phylogenetic trees.
Postgraduate doctoral study programme
Dan Gusfield (1997.), Algorithms on Strings, Trees and Sequences, Cambridge University Press
Arthur Lesk (2014.), Introduction to Bioinformatics, Oxford University Press
Richard Durbin, Sean R. Eddy, Sean Eddy, Anders Krogh, Graeme Mitchison (1998.), Biological Sequence Analysis, Cambridge University Press
L0 English Level