doc. dr. sc. Krešimir Križanović

Assistant professor, Department of Electronic Systems and Information Processing

Uncovering the genomic basis of phenological traits in Chouardia litardierei (Asparagaceae) through a genome-wide association study (GWAS)

Šarančić, Sara Laura; Pleić, Nikolina; Križanović, Krešimir; Surina, Boštjan; Mitić, Damjan; Radosavljević, Ivan
2025.
Frontiers in plant science

Genome-wide association study (GWAS) provides insights into the genomic basis of reproduction-related traits in Chouardia litardierei (Asparagaceae)

Šarančić, Sara Laura; Pleić, Nikolina; Mitić, Damjan; Križanović, Krešimir; Surina, Boštjan; Radosavljević, Ivan
2025.
Bmc plant biology

UNRAVELING THE GENOMIC BLUEPRINT: INSIGHTS INTO PHENOLOGICAL AND REPRODUCTION-RELATED MORPHOLOGICAL TRAITS IN CHOUARDIA LITARDIEREI (HYACINTHACEAE) VIA GWAS ANALYSIS

Šarančić, Sara Laura; Pleić, Nikolina; Križanović, Krešimir; Radosavljević, Ivan
2024.

Genomic basis of ecological plasticity in Chouardia litardierei (Hyacinthaceae)

Šarančić, Sara Laura; Mitić, Damjan; Križanović, Krešimir; Radosavljević, Ivan
2024.

The Applied genomics development strategy by the Croatian academy of sciences and arts paves the way for the future development of applied genomics in Croatia

Sedlić, Filip; Sertić, Jadranka; Markotić, Alemka; Primorac, Dragan; Slavica, Anita; Zibar, Lada; Vlahoviček, Kristian; Kušec, Vesna; Barić, Ivo; Paar, Vladimir; Borovečki, Fran; Žmak, Ljiljana; Kurolt, Ivan-Christian; Canki-Klain, Nina; Roksandić, Sunčana; Rinčić, Iva; Jurić, Hrvoje; Škaro, Vedrana; Marjanović, Damir; Projić, Petar; Primorac, Damir; Starčević, Antonio; Vujaklija, Dušica; Šikić, Mile; Križanović, Krešimir; Gamulin, Stjepan
2024.
Croatian medical journal

Whole genome sequencing of Vibrio harveyi from different sites in the Mediterranean Sea providing data on virulence and antimicrobial resistance genes

Zupičić, Ivana Giovanna; Oraić, Dražen; Križanović, Krešimir; Zrnčić, Snježana
2024.
Aquaculture

Diversity of MHC class II DRB alleles in the Northern chamois genus Rupicapra

Stipovljev, Sunčica ; Bužan, Elena ; Iacolina, L. ; Safner, Toni ; Rezić, Andrea ; Galov, Ana ; Križanović, Krešimir ; Ambrali, H. ; Arnal, M.C. ; Babaev, E. ; Bego, F. ; Farkas, A. ; Gačić, Dragan ; Lazar, Petar ; Maletić, Vladimir ; Markov, G. ; Milošević, Dragana ; Papaioannou, H. ; Scandura, M. ; Šprem, Nikica
2024.
Journal of mammalogy

The genetic architecture of some phenological and reproduction-related morphological traits in Chouardia litardierei (Hyacinthaceae) as revelaed by GWAS

Šarančić, Sara Laura; Pleić, Nikolina; Križanović, Krešimir; Radosavljević, Ivan
2024.

Genome-environment association study uncovers loci associated with local adaptation in Chouardia litardierei (Hyacinthaceae)

Šarančić, Sara Laura; Mitić, Damjan; Križanović, Krešimir; Radosavljević, Ivan
2024.

Towards the Investigation of the Adaptive Divergence in a Species of Exceptional Ecological Plasticity: Chromosome-Scale Genome Assembly of Chouardia litardierei (Hyacinthaceae)

Radosavljević, Ivan; Križanović, Krešimir; Šarančić, Sara Laura; Jakše, Jernej
2023.
International journal of molecular sciences

Utilizing parental data in trio binning diploid de novo genome assembly

Lipovac,Josipa;Križanović,Krešimir;Šikić,Mile
2023.

Using De Novo Metagenome Assembly for Improved Metagenomic Classification

Lipovac, Josipa; Križanović, Krešimir
2023.

Improving Metagenomic Classification Accuracy through Metagenome Assembly-driven Database Reduction

Lipovac,Josipa;Friganović,Krešimir;Šikić,Mile;Križanović,Krešimir
2023.

Whole genome sequencing and determination of virulence and antimicrobial resistance genes of bacteria Vibrio harveyi from the Mediterranean Sea

Zupičić, Ivana Giovanna; Oraić, Dražen; Križanović, Krešimir; Zrnčić, Snježana
2023.

Removing chimeric reads improves metagenome assembly

Lipovac,Josipa;Huang,Meghan;Šikić,Mile;Bakić,Sara;Požega,Luka;Križanović,Krešimir
2022.

Experiment adjusted bioinformatics workflow reduces genotyping errors in polymorphic multilocus MHC systems

Arbanasić, Haidi ; Križanović, Krešimir ; Svetličić, Ida ; Bugarski, Dejan ; Mirčeta, Jovan ; Konjević, Dean
2022.

Chouardia litardierei (Hyacinthaceae) genome sequence

Šarančić, Sara Laura ; Križanović, Krešimir ; Jakše, Jernej ; Radosavljević, Ivan
2022.

A chromosome-level genome assembly of Chouardia litardierei (Hyacinthaceae), a plant characterized by extreme ecological plasticity

Šarančić, Sara Laura ; Križanović, Krešimir ; Jakše, Jernej ; Radosavljević, Ivan
2022.

Efficacy of next-generation sequencing in bacterial zoonoses diagnostics

Duvnjak, Sanja ; Pavlinec, Željko ; Vaser, Robert ; Križanović, Krešimir ; Šikić, Mile ; Zdelar-Tuk, Maja ; Reil, Irena ; Spičić, Silvio
2021.
Veterinarska stanica

Discovering gene variants using clustering and dynamic programming algorithms

Frajlić, Nera
2020.

Genome scaffolding based on HERA algorithm

Jurić, Matija
2020.

Benchmarking metagenomic classification tools for long read sequencing data

Josip Marić ; Sylvain Riondet ; Krešimir Križanović ; Niranjan Nagarajan ; Mile Šikić
2020.

Face detection on images, using deep learning models

Klaić, Mario
2020.

DNA sequencing data visualisation

Osredek, Nikola
2020.

Variability of the DRB locus of MHC genes class II in red deer (Cervus elaphus) from a mountain region of Croatia

Bujanić, Miljenko ; Bužan, Elena ; Galov, Ana ; Arbanasić, Haidi ; Potušek, Sandra ; Stipoljev, Sunčica ; Šprem, Nikica ; Križanović, Krešimir ; Konjević, Dean
2020.
Veterinarski arhiv

RNA sequencing data visualisation

Vrlec, Jan
2020.

Discovering gene variants from sequencing data

Kosier, Sanja
2019.

Diversity of the MHC class II DRB alleles in chamois populations

Stipoljev, Sunčica ; Bužan, Elena ; Iacolina, Laura ; Safner, Toni ; Rezić, Andrea ; Potušek, Sandra ; Križanović, Krešimir ; Galov, Ana ; Bego, Ferdinand ; Markov, Georgi ; Papaioannou, Haritakis ; Farkas, Attila ; Scandura, Massimo ; Milošević, Dragana ; Maletić, Vladimir ; Babaev, Elmar ; Gačić, Dragan ; Lazar, Peter ; Arnal, María Cruz ; Ambarlı, Hüseyin ; Šprem, Nikica
2019.

RNA Splice Aware Mapper

Marić, Josip ; Križanović, Krešimir ; Šikić, Mile
2019.

RNA Transcriptome Mapping with GraphMap

Križanović, Krešimir ; Sović, Ivan ; Krpelnik, Ivan ; Šikić, Mile
2017.
Lecture notes in computer science

Evaluation of tools for long read RNA-seq splice- aware alignment

Križanović, Krešimir ; Echchiki, Amina ; Roux, Julien ; Šikić, Mile
2017.
Bioinformatics

TGTP-DB – a database for extracting genome, transcriptome and proteome data using taxonomy

Križanović, Krešimir ; Marinović, Mladen ; Bulović, Ana ; Vaser, Robert ; Šikić, Mile
2016.

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads

Sović, Ivan ; Križanović, Krešimir ; Skala, Karolj ; Šikić, Mile
2016.
Bioinformatics

Long RNA-Seq Alignment

Jurić, Antonio
2016.

RNA-seq Alignment Using Existing Gene Annotations

Krpelnik, Ivan
2016.

Tree of Bloom Filters

Škugor, Luka
2016.

Real-Time Analysis of a Metagenomic Sample Obtained by Nanopore Based Sequencing Technology

Vujević, Ivan
2016.

Some new results on assessment of Q-gram filter efficiency

Novak, Andrej ; Križanović, Krešimir ; Lančić, Alen ; Šikić, Mile
2015.

Geospatial data streams : Formal framework and implementation

Galić, Zdravko ; Baranović, Mirta ; Križanović , Krešimir ; Mešković, Emir
2014.
Data & knowledge engineering

Spatio-temporal extension of a data stream management system

Križanović, Krešimir
2013.

OCEANUS: A Spatio-Temporal Data Stream System Prototype

Galić, Zdravko ; Križanović, Krešimir ; Mešković, Emir ; Baranović, Mirta
2012.

Implementation of Spatio-Temporal Data Types with Java Generic

Križanović, Krešimir ; Galić, Zdravko ; Baranović, Mirta
2011.

Data Types and Operations for Spatio-Temporal Data Streams

Križanović, Krešimir ; Galić, Zdravko ; Baranović, Mirta
2011.

Spatio-Temporal Data Streams: An Approach to Managing Moving Objects

Križanović, Krešimir ; Galić, Zdravko ; Baranović, Mirta
2010.

A Protocol For Self-Organizing Peer-to-Peer Network Supporting Content-Based Search

Mekterović, Igor ; Baranović Mirta ; Križanović Krešimir
2008.
WSEAS transactions on information science and applications

Content-Based Search Using Self-Organizing Peer-to-Peer Network

Mekterović, Igor ; Baranović, Mirta ; Križanović, Krešimir
2008.

Croatian Geographical Names Database

Galić, Zdravko ; Baranović, Mirta ; Križanović, Krešimir ; Anzil, Jasenka
2007.

Integer Programming in Some Scheduling Problems

Križanović, Krešimir
2005.

The Tanagra Project - A Simple MDBS API

Orel, Ognjen ; Križanović, Krešimir ; Baranović, Mirta
2004.

ISVU - Higher Education Information System

Anzil, Jasenka ; Baranović, Mirta ; Brkić, Ljiljana ; Domazet-Lošo, Mirjana ; Jurinčić, Ana ; Kalafatić, Valdi ; Krajcar, Slavko ; Kranjčec, Denis ; Kremenjaš, Davorin ; Križanović, Krešimir ; Lišnjić, Dino ; Ljubešić, Marija ; Mačkala, Ladislav ; Matijašević, Boris ; Mekterović, Igor ; Orel, Ognjen ; Pukljak Zoković, Dubravka ; Rončević, Hrvoje ; Zakošek, Slaven ; Zoković, Hrvoje ; Žganec, Tomislav
2000.

Terrain classification based on sattelite images in different spectral bands

Križanović, Krešimir
1999.

Teaching

University undergraduate

University graduate

Competences

  • Computational and artificial intelligence
    Artificial intelligence Learning systems Machine learning Prediction methods
  • Engineering in medicine and biology
    Bioinformatics Computational biology
  • Mathematics
    Algorithms Machine learning algorithms
  • Computers and information processing
    Data structures Data engineering